NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24515J20084_1000128

Scaffold JGI24515J20084_1000128


Overview

Basic Information
Taxon OID3300001743 Open in IMG/M
Scaffold IDJGI24515J20084_1000128 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6031
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016759Metagenome / Metatranscriptome245Y
F055296Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
JGI24515J20084_10001283F016759GAGMSMEPIQRQMNNPVVGGLNVPALLQDTITGLTFIQLNVPNTILDMYNGVEPGAAADFYTYELQKNSISTGRTFFSTAMNTGSAGRAAVGPIRLAAGQLQMSGTPVGAAAPALDQNIVIKFSNGF*
JGI24515J20084_10001285F055296N/AMIEMDTKLRSFQVENMAKYDKFREIQQSRNKKIGQRLNELIDKEVKEADPQFKELTAIRSKDAPDIIVPNPFVLDQFHSLPKWEEYLRTLTKKEHEELYLHLIALKQVTQDFEDYRLE*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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