Scaffold JGI11772J19994_1001135

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI11772J19994_1001135

Scaffold JGI11772J19994_1001135

Overview

Basic Information
Taxon OID	3300001748 Open in IMG/M
Scaffold ID	JGI11772J19994_1001135 Open in IMG/M
Source Dataset Name	Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	5814
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location Name	Etoliko Lagoon, Greece
Coordinates	Lat. (^o)	38.4825	Long. (^o)	21.315	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062275	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
JGI11772J19994_10011353	F062275	AGGA	MIAHTIDLVGEFKALPTNHEQWWEEYKKGEKFARLIKKKNALPLKEIYKKMYEDGIHYLQLHFEGGHDEGGFDGDFVFLDEDKNPMTIKDLSKYSPTGWVDEYTPLEYTIDKGKNKITQVFEYRNTNYSDVKVTQDWLVNKWYEFGFLEEWGSFAFEGNVYGEVVVSTKDGSYNVDANETFEQYESKDFEGKMFDE*

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