NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11772J19994_1004621

Scaffold JGI11772J19994_1004621


Overview

Basic Information
Taxon OID3300001748 Open in IMG/M
Scaffold IDJGI11772J19994_1004621 Open in IMG/M
Source Dataset NameSaline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2656
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location
Location NameEtoliko Lagoon, Greece
CoordinatesLat. (o)38.4825Long. (o)21.315Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012965Metagenome / Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
JGI11772J19994_10046213F012965GAGGMSLSTVIQNVANEAGYTVSPNIITATDTTTKQLLAIANRINREIFEQYPWTKCYASGSITLVAGQAEYALPAAFSYYQYDTFWNQSNRWRVIGPMTPQEYADIRGFGLNTTIYQRFQIRGISNNQLLISPTPGASNNGDVIIFEYISDRSVRPKTWTASTAFAANSYCFYNGNYYQTTAGGTTGGTPPTHTSGSISDGGVTWTYYNGIYDKFLADTDTSLFNEKVLEQGVLERFAEVHGLDGIKPKFQVQLHEEWSRDMPSKIYYAGSIQRAEIFARNGVAVFGTWI*
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