NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24025J20009_10005613

Scaffold JGI24025J20009_10005613


Overview

Basic Information
Taxon OID3300001749 Open in IMG/M
Scaffold IDJGI24025J20009_10005613 Open in IMG/M
Source Dataset NameOil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7844
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location
Location NameCoal Oil Point, Santa Barbara, CA
CoordinatesLat. (o)34.39225Long. (o)-119.845662Alt. (m)Depth (m)47
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008068Metagenome / Metatranscriptome339Y

Sequences

Protein IDFamilyRBSSequence
JGI24025J20009_100056134F008068AGAAGGMDEIIVAGEPCLVIRSPLIPRTLLCNSLLRPLLSRLKSSKEFVAFVSEPCVAAPKGLDVVLVTAFWPGCVFDQATEGALSQPVQIIKPQHLMLVERELYMKLTKKSCLFGDFLDSLLLYNEDKNKVCRLLSKVRTRIRENKAYGLFFMTEVRGMEDVIDQTAGIFEIVVKAKVETKHDEPLLTLTIMKHPNIAETDKKIEVVFEKGQPKRRA*
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