Scaffold JGI24025J20009_10106085

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24025J20009_10106085

Scaffold JGI24025J20009_10106085

Overview

Basic Information
Taxon OID	3300001749 Open in IMG/M
Scaffold ID	JGI24025J20009_10106085 Open in IMG/M
Source Dataset Name	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	788
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → Thermotoga → unclassified Thermotoga → Thermotoga sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps

Source Dataset Sampling Location
Location Name	Coal Oil Point, Santa Barbara, CA
Coordinates	Lat. (^o)	34.39225	Long. (^o)	-119.845662	Alt. (m)		Depth (m)	47
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102489	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24025J20009_101060852	F102489	AGGA	MPANSKGSLHEREAVAEYESRGWQVYRPQKASRYGTQDIFNMFDFCAVKDNEVHFVQVKTNNTRGFLQKLKAWREEHPVPGVEWRLWVRLDARKHPEKWKKY*

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