Scaffold JGI2171J19970_10026991

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI2171J19970_10026991

Scaffold JGI2171J19970_10026991

Overview

Basic Information
Taxon OID	3300001753 Open in IMG/M
Scaffold ID	JGI2171J19970_10026991 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-24_28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2442
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location Name	White Oak River estuary, North Carolina, USA
Coordinates	Lat. (^o)	34.640199	Long. (^o)	-77.109447	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022199	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI2171J19970_100269917	F022199	AGGA	MATKKTSMFTLTERVTISAAATDTFATIDLGSYVDVGDRQALQIHSVDFIFQGSTAGEAMQSTFTGDCQVNCQVTDLNRGGLVFADDRALVASAQLNFDNPANSLYT

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