NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold CSTRM40_1001793

Scaffold CSTRM40_1001793


Overview

Basic Information
Taxon OID3300001760 Open in IMG/M
Scaffold IDCSTRM40_1001793 Open in IMG/M
Source Dataset NameWastewater microbial communities from Belvaux, Luxembourg - M40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3180
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Belvaux, Luxembourg

Source Dataset Sampling Location
Location NameBelvaux, Luxembourg
CoordinatesLat. (o)49.506095Long. (o)5.943536Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033857Metagenome / Metatranscriptome176Y
F045124Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
CSTRM40_10017932F033857AGCAGGMVEIIDLSTVSPAPVIVRIGNGDEIEEIDLTIVPARGTLLLSEATQRHGGWDKIPDDEMIPAIAAICRQSNPRITAEWLETKLTRPQLAGLTQVILAQAFRPWGNQKKDDKEQDAGEKNR
CSTRM40_10017936F045124AGGTGGMSDDSTLRAMIYETRQDVRWIKDTLKEIKESNQARDELIAEIKARQDQQIGRDSALAVVISAIVAFFTALASGGWFR*

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