NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACM18_1005464

Scaffold ACM18_1005464


Overview

Basic Information
Taxon OID3300001778 Open in IMG/M
Scaffold IDACM18_1005464 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM18, ROCA_DNA027_0.2um_3g
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7915
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)7.2875Long. (o)-53.0005Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001841Metagenome / Metatranscriptome627Y
F027171Metagenome / Metatranscriptome195N
F088830Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
ACM18_10054647F001841AGGVRIAGWLLWRDPVAKPEPTPPKPFRKPVLAYTIGDIPTELMAVIRIEWLKGNGSASEVEEYQIEECPDAQAQFSYVVGTALRQGADVCVLTQYQPVDLGVDE*
ACM18_10054648F088830N/AMNHTTPIPNLKLSPWYYAVLAAKAVMQQKITEMEQAGIVSPAFYIARLAELEELEQFLKMSWDEWMDSLDPGQTAVEESK*
ACM18_10054649F027171GGAGGVSQVLEIDSLEFDHDGLLHITAVVDEMVLVRKQTLLDPPEWGPALCRGSFYLSDEDLVPATDALLRKLISDRVDDWAPVDPDD*
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