NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ACM41_103384

Scaffold ACM41_103384


Overview

Basic Information
Taxon OID3300001816 Open in IMG/M
Scaffold IDACM41_103384 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM41, ROCA_DNA031_2.0um_3k
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)803
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon River plume to Atlantic Ocean
CoordinatesLat. (o)7.2875Long. (o)-53.0005Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004546Metagenome / Metatranscriptome433Y
F034111Metagenome / Metatranscriptome175N

Sequences

Protein IDFamilyRBSSequence
ACM41_1033841F004546N/AMPKQTLEEEFPFDEFPWKLIYKDGKESRKCYFQSEDHRKKHVERYKLKKKD
ACM41_1033842F034111N/AMLELTLASLLNTMSADFCALMETEKDVVKSAFIAYSMANKQYGPDNVIKIVTEANLIEIKSLAVSSVVTKCPNKL*

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