Scaffold ACM55_1050713

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ACM55_1050713

Scaffold ACM55_1050713

Overview

Basic Information
Taxon OID	3300001829 Open in IMG/M
Scaffold ID	ACM55_1050713 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM55, ROCA_DNA132_0.2um_27g
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	720
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon River plume to Atlantic Ocean
Coordinates	Lat. (^o)	12.4145	Long. (^o)	-52.2197	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017147	Metagenome / Metatranscriptome	242	N

Sequences

Protein ID	Family	RBS	Sequence
ACM55_10507131	F017147	GAG	MPKWKKFYKFKEGLAVTNLLYEPLVSKDKKIFCMNWNKNEYHDNEFMTEELYNFWFNQEVKYLLHLSNKKYIPEILYLDTKKRMIEFKWYDKNLNVMIENNTINKIKNWQNKIKEIKDDLEKDKIFKINMYPHTFYFDDDDNAHIMDLYGCTDRYSRYLDTRFLKPLIRNKRFDKFIVNERLDTHELYKETIKTNYAEWPGDFLNA*

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