Scaffold ACM4_1009561

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold ACM4_1009561

Scaffold ACM4_1009561

Overview

Basic Information
Taxon OID	3300001831 Open in IMG/M
Scaffold ID	ACM4_1009561 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM4, ROCA_DNA074_0.2um_10l
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1533
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon River plume to Atlantic Ocean
Coordinates	Lat. (^o)	4.8818	Long. (^o)	-51.3608	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030378	Metagenome / Metatranscriptome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
ACM4_10095614	F030378	AGGA	MTSNDPRSIDFSYKKYSLEQLDNWVNDALNCEDLTPQDIYDTIVNVVDESVEYHKKYLTKSIELLSLLKGHRPVDFDYTATGEKFPRYTEEELDAMCDAAAEQDERDKCREYNLREAEYYTKRAELDAQHSKHYYDYTRNDLNRENPFTIPDYTEI*

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