Scaffold RCM39_1042562

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold RCM39_1042562

Scaffold RCM39_1042562

Overview

Basic Information
Taxon OID	3300001837 Open in IMG/M
Scaffold ID	RCM39_1042562 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM39, ROCA_DNA237_0.2um_Ob_C_3a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1527
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Ábidos, Para, Brazil
Coordinates	Lat. (^o)	-1.919017	Long. (^o)	-55.525717	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM39_10425623	F000258	GGAG	MANYNLDAMLELRKFIWDDLVNLEIFDENEYYIDTMGMSIIPIVPTQQIAEIDQFLSGKKHIVYDKIATSYQDNWAICSEQILFTIYSVEYSDIIQIRNYMTDMFRRMDDSASDVNRWSGLSDKFKFHSIYISDISPTAPSQEIKGFLSADIILEVMYSRITNHLGRFL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.