NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM33_1007889

Scaffold RCM33_1007889


Overview

Basic Information
Taxon OID3300001838 Open in IMG/M
Scaffold IDRCM33_1007889 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM33, ROCA_DNA217_0.2um_bLM_C_2a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1396
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NamePonta de Pedras, Para, Brazil
CoordinatesLat. (o)-1.519367Long. (o)-48.91795Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037219Metagenome168Y
F053263Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
RCM33_10078891F037219N/ASKQWKDWEREVARDLGGTRTGPRGFDVPDVINLPKGFAPECKYQKRLSLKDADLKQAEHNARKNEWSLFLREARSGRRFVVVPYKTFLKMWEAYTQGENDNE*
RCM33_10078892F053263AGGAGMSEYITIAGIVQFDPRTRTAGNKQVRDVVIRTIGSSKNFSVTLWPEKDHITVNKGDFLVCDGKYSQSVGQNKDGEQVTYNNLSATTVIRLAGEDTSSAPAQATAAAVTGDDFPF*
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