Scaffold RCM40_1081328

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM40_1081328

Scaffold RCM40_1081328

Overview

Basic Information
Taxon OID	3300001839 Open in IMG/M
Scaffold ID	RCM40_1081328 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM40, ROCA_DNA238_2.0um_Ob_C_3b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	602
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Ábidos, Para, Brazil
Coordinates	Lat. (^o)	-1.919017	Long. (^o)	-55.525717	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004788	Metagenome / Metatranscriptome	423	Y
F104515	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM40_10813282	F004788	AGG	MDAYDLLISQFDEKVTQLKDYLSEGKSESYEEYKRICGEIKGLLIARGYTLDLKHTVENADD*
RCM40_10813283	F104515	N/A	MLMTEILLGTNPSDPRVVGAYRPDASAEEKATQLPNPSGYHILCAIPEMEKEYESGLVKAEET

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