NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM34_1001025

Scaffold RCM34_1001025


Overview

Basic Information
Taxon OID3300001843 Open in IMG/M
Scaffold IDRCM34_1001025 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM34, ROCA_DNA218_2.0um_bLM_C_2b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8294
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NamePonta de Pedras, Para, Brazil
CoordinatesLat. (o)-1.519367Long. (o)-48.91795Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y

Sequences

Protein IDFamilyRBSSequence
RCM34_100102510F000369AGGAMEIELAERNDRINKVVEELLKGNSPTQIAATTGFKRAEVIEYIDEWKQVVRNDNTTRERAKEAVAAADQHYAMLINEAWKTAEAAEGQGQFNVKANALKLISDIETKRIGMLQQVGLLDNAELATQVAEAERKQDILVKILKEVTSTCPKCKIEVAKRLSQITGIVEPIEIIEEVSGS*
RCM34_100102512F000376AGAAGGVSINQELAKQCKCCGKHVPLPVVFKEYNGITLCPTTFSNVMEYKRIWKSIGSRPMGNIRKHFSDYVQQIVEETIDKNEDGSIQ*
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