NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM41_1001934

Scaffold RCM41_1001934


Overview

Basic Information
Taxon OID3300001847 Open in IMG/M
Scaffold IDRCM41_1001934 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12882
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameSantar?m, Para, Brazil
CoordinatesLat. (o)-2.484383Long. (o)-55.0075Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031073Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
RCM41_10019343F031073AGGAGMRQLQLPHYPKLVYTPRIAGTRDLCAMLDHLIDFTPEVGNHSGKVPSLEKQHPADVVDAQVRTADWLKSMGAVDTETVITNAEVKAARTSFTNIVSSAPNEVTHENLKQIKSPVAVKHLVGMLTAYDWEFVNQAKELRGFVVAKLLEECEHPNANIRLKALGLLGKVTEVGLFTDKLEVKKQDVPEEEIDRKLKEKLAKFMDVTDTEYTDIEEIEKPETPADE*
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