NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM41_1010170

Scaffold RCM41_1010170


Overview

Basic Information
Taxon OID3300001847 Open in IMG/M
Scaffold IDRCM41_1010170 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6133
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameSantar?m, Para, Brazil
CoordinatesLat. (o)-2.484383Long. (o)-55.0075Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022657Metagenome / Metatranscriptome213Y
F054523Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
RCM41_10101702F054523GGAMLDIRNVVIANLNGHTGMMARFVKMKSLLDQKAAANLRLLATKNNINRNSDYQYLMLPVADSTAPVNGIDYIHPVVKPTVDYATAVITKGLAQNGEINFEFVADNEADEPAARQATEMVHKLINQNNDPHAILQHWVMDACMHKNGEMMVSPMRESFVRYVTTQGTLDQLRAFEQQAADAGLTALRTQRRKINVDMQRVVAELPESLRARANEM
RCM41_10101706F022657AGGAGMAYNSTTAIGNGTGAYQTDIVVKDLDLDVSNRVKDDTPVLNMAMAKKRKVVSTLPLW
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