Scaffold RCM47_1017285

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM47_1017285

Scaffold RCM47_1017285

Overview

Basic Information
Taxon OID	3300001848 Open in IMG/M
Scaffold ID	RCM47_1017285 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2781
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Santar?m, Para, Brazil
Coordinates	Lat. (^o)	-2.484383	Long. (^o)	-55.0075	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F071976	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM47_10172854	F071976	GGAG	MKYRVIVNGVSFYTTGAAIKRGVGDFVGVNAAVRQVFERMQTAIEIGLAASVTVYDDRMQSTRYDVQISKV*

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