Scaffold RCM26_1065899

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM26_1065899

Scaffold RCM26_1065899

Overview

Basic Information
Taxon OID	3300001849 Open in IMG/M
Scaffold ID	RCM26_1065899 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	735
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Afu?, Para, Brazil
Coordinates	Lat. (^o)	-0.083883	Long. (^o)	-51.051417	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012668	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM26_10658991	F012668	N/A	TIGDVMAIARFEPVTINTVTNGISTVGTQTTTITKWFDTRAKIKDVHNSVRISDRYRIYSDLVNLEFNYTPNMRTIVNLQQNYSITYRGNDWRITDVYESNDRMKVTLLCYRNDPSAPV*

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