Scaffold RCM37_1010088

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM37_1010088

Scaffold RCM37_1010088

Overview

Basic Information
Taxon OID	3300001850 Open in IMG/M
Scaffold ID	RCM37_1010088 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1069
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Ábidos, Para, Brazil
Coordinates	Lat. (^o)	-1.919017	Long. (^o)	-55.525717	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034546	Metagenome / Metatranscriptome	174	Y
F095154	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM37_10100884	F034546	AGGAG	MREPKALFTDADVAEATEGMGATVLKPRKAKRTAMRVKQSKGFVKGTNGIATGYPRKVFV
RCM37_10100886	F095154	N/A	DNRKFKSLKTAVAYANKQFVRTGVVLSVEQDSTPNKNPGYVAYLAKGMTL*

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