NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM37_1069804

Scaffold RCM37_1069804


Overview

Basic Information
Taxon OID3300001850 Open in IMG/M
Scaffold IDRCM37_1069804 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1933
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameÁbidos, Para, Brazil
CoordinatesLat. (o)-1.919017Long. (o)-55.525717Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078706Metagenome116N
F083714Metagenome112Y
F086839Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
RCM37_10698041F086839N/AMESRFEVKGLKETLEAFNLLQEEIGDKDAKSKILIPAVREAMKPVLAMAKALSPKDTGALDRSLYITARRPTRKDMKSRYVTPKDSVISLVSSRPIPKKLKQKFHAEYGSLQGKEYKRAKRKFYSEQGIMHDARAIANEFGTANMSAKPFMRISLESQAQMVASKLGVILKQKMDSYKAKNLTTQGK*
RCM37_10698042F078706AGGAMSKLGTALGKKYEENRLSVLTRKFELGDHTFKVRVPSVQEIEAIYNYFKNPNEDKIEQEYQLMLKAFENLEGKEGVEIKDNDVIIEGRSVRETAKNKHILQHRIVEYIKFLIPETGSLEDITYEDVEAEFPLSVQMTLVEKINEVISPEYKDIKSK*
RCM37_10698043F083714N/AMVFNGHTIQDIDALDEATMNEITVMFADGLIGNRSLLTMQGSLVSGVFNYLRANNSQPYTLKGVLGNAYEYIYGIEKTDPNESLLLFMSQAPDFKMNRFESK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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