NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold RCM37_1114427

Scaffold RCM37_1114427


Overview

Basic Information
Taxon OID3300001850 Open in IMG/M
Scaffold IDRCM37_1114427 Open in IMG/M
Source Dataset NameMarine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location NameÁbidos, Para, Brazil
CoordinatesLat. (o)-1.919017Long. (o)-55.525717Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012339Metagenome / Metatranscriptome281Y
F018925Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
RCM37_11144271F012339AGGMNEYKPYNESLTTPPVQNPHSPAQSGYRQQPVDIPGVLDQTRKLYQPYQPQKDNK*
RCM37_11144272F018925N/AMSANVYTTLANATVYTDKLRVSTGATPVTYQVYATALGNASPAGNLYSAAIQVPAATTRDLYAGAGNKVTITGSNWTALELGTASSAQAGVIGYGS*

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