Scaffold RCM31_10000247

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM31_10000247

Scaffold RCM31_10000247

Overview

Basic Information
Taxon OID	3300001851 Open in IMG/M
Scaffold ID	RCM31_10000247 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5921
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Afu?, Para, Brazil
Coordinates	Lat. (^o)	-0.156917	Long. (^o)	-50.62255	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001848	Metagenome / Metatranscriptome	626	Y
F079801	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM31_100002471	F079801	N/A	MTFITENNIANLYSALIEFPVFDEYKLPPASKVDFVIVHDNTICGQYEPPESGEPHVITISTARHSHLYPVLITLCHEIIHMICYLESPKTEKYT
RCM31_100002479	F001848	N/A	MILHYIPKDQLRQHWDYVKHGLELVRQRGHTSWIVEDVYCDCYEQRSMLFIGIVDNKAVGLVILQPINDTLHIWVTWSELHDMTLFQQAWQEIQQIAKQGGKTKVTFNSQRKGWERRARQMGFKPQTWEFTL*

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