Scaffold RCM31_10339446

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold RCM31_10339446

Scaffold RCM31_10339446

Overview

Basic Information
Taxon OID	3300001851 Open in IMG/M
Scaffold ID	RCM31_10339446 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM31, ROCA_DNA206_0.2um_MCP-S_C_3b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	726
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Afu?, Para, Brazil
Coordinates	Lat. (^o)	-0.156917	Long. (^o)	-50.62255	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103254	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM31_103394462	F103254	N/A	IKPIKNLYDYQQAQKYLESVFHKELSDEESNNVAILEILIEDFERKGEMEKENVILEPLIDYVYELVNNASKFENPGLIERGLKLGEEYGELSAEILKLFEYKRSNETKEKIKENILLESTDCLIMIFDIMSQMGFTKEQICEMAEQQVNKWMKNIEIK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.