Scaffold JGI24524J20080_1001771

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24524J20080_1001771

Scaffold JGI24524J20080_1001771

Overview

Basic Information
Taxon OID	3300001853 Open in IMG/M
Scaffold ID	JGI24524J20080_1001771 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - LP-49
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3527
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0003	Long. (^o)	-144.9998	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014014	Metagenome	266	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24524J20080_10017714	F014014	GGAG	MKKKDIDTMMTLEKDKYYVIISELPDDQFHLVAYDTTGREYKTFENHSVASIMHEGVMALLRRRGDEVFRCGESEIEFNFAAKELKIEYQDETGEKLDMPENVIKVDFGKEH*

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