NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24422J19971_10087802

Scaffold JGI24422J19971_10087802


Overview

Basic Information
Taxon OID3300001854 Open in IMG/M
Scaffold IDJGI24422J19971_10087802 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1636
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.6478111Long. (o)-77.1112083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008068Metagenome / Metatranscriptome339Y

Sequences

Protein IDFamilyRBSSequence
JGI24422J19971_100878021F008068AGGAGMEMDEIIVAGEPCLVIRSPLIPRTLLCNSLLQPLLSRLKGPEEFVAFVSEPCVAPQGLDVVLVTAFWPRCVFDQVAGGSVSRPLQTIKPQHLMLVERELYMKLSKKSCLFGDFLDSLLLHNEDRRKVSELLSKVRSWIRDNKSYGLFFLTDVRGMEGFVDQTAGIFEIVVKAEVKTEQDEPLLRFTIMKHPKIAKIDKKIEVAFEKGQPKRRRG*
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