NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI24422J19971_10116634

Scaffold JGI24422J19971_10116634


Overview

Basic Information
Taxon OID3300001854 Open in IMG/M
Scaffold IDJGI24422J19971_10116634 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1323
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location
Location NameWhite Oak River estuary, North Carolina, USA
CoordinatesLat. (o)34.6478111Long. (o)-77.1112083Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079544Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
JGI24422J19971_101166342F079544N/ADERSQERIVLSGLQLDNQTCLYNVTVKNTGTIEVRVRAIYVADGTTTALICDPSAYMDTYIPPDRSLNISLPSGVPFKPEAKIIAATERGVKTKEYEALLVYGPPKPVWEYDPTKLYIGPLMLQFDAFWYRKTRGDGTLDPNEPWNPGWSIPKGFGYCAWNITVMNIDDRNITINRFSTFNVVPNDSPSTELPWYLEPTNQTDLTQFLPVNQTRNMIYIWADPKEASGDSRPQKMTLPECTCMVFLTFFGVFHEHDGTTTTYAQTIPFEAAITVVG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.