Scaffold JGI12627J18819_10002089

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12627J18819_10002089

Scaffold JGI12627J18819_10002089

Overview

Basic Information
Taxon OID	3300001867 Open in IMG/M
Scaffold ID	JGI12627J18819_10002089 Open in IMG/M
Source Dataset Name	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7194
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Davy Crockett National Forest, Groveton, Texas, USA
Coordinates	Lat. (^o)	31.11	Long. (^o)	-95.15	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001778	Metagenome / Metatranscriptome	636	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12627J18819_100020896	F001778	AGGA	MSRFVDEGKRTSEPGPPPELPGAIERLTATFRELTDKRDRLEGDVEKLRRRLAEAEGELDQLQLNQLELSWRPPQLAEQRLEHYRDKLRAHLATVTSELDATKASIVEIRAVLVRQYAVAQASWRPAEALTVPCPACGQPCVPHXAAAAGRGWRKGWYECPADDCNSAFSARWSGGVHPVVKMGGL*

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