NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12627J18819_10002406

Scaffold JGI12627J18819_10002406


Overview

Basic Information
Taxon OID3300001867 Open in IMG/M
Scaffold IDJGI12627J18819_10002406 Open in IMG/M
Source Dataset NameTexas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6801
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001189Metagenome / Metatranscriptome753Y
F054246Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
JGI12627J18819_1000240610F001189N/AVDKLLIVVFGPLVFAAVLLLIATGIRRVIARLRSRRTPDQIKAAYDAYLRRLLNPQPDAVERELGKLLPERLLQLYEDKSAIQSVGFQLEKPGKKRWRTKHWPVYCFEPLDTEALNEVPYPYKEGLDPGFCFATTGRGSWYWIAASDQRAKDSPVIFLDYDGGGSQGETVANSLDEFLNWPRLPVK*
JGI12627J18819_100024068F054246N/AMRGFVFLLVGLLVTSLIGGAQDPNDCASVKENGDEVTLRAESWDPVLTIGRTLAARYGINVSVEAPKWAFPGDTEDVAVADPAFSEQHDNIHYDVKKRHAIEVRFSSSGNKHPDDVARLLRQVADAANRVMPYAYRLDASSGDYALVPTRTRNPNGDLEDVLPLLDRNVTIPLGTRSIAEHANLMADELSKRTGLHIGCCQALVAGVPWGMAKVRFEADNKPAREVLKWLILTEQQANSQASSWHPDYDHWVVRCDGTGAPWCFIEVEGKFSPRCP*
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Institute for Fundamental Biomedical Research
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