NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12627J18819_10187979

Scaffold JGI12627J18819_10187979


Overview

Basic Information
Taxon OID3300001867 Open in IMG/M
Scaffold IDJGI12627J18819_10187979 Open in IMG/M
Source Dataset NameTexas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)836
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000572Metagenome / Metatranscriptome1016Y
F063131Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
JGI12627J18819_101879791F063131AGGMAGRGFRISSFLVVLADDAGGRAIPVWLNGPEGHGLFRGAGDHPHPEPAEVITAGLLRAAGVTVTGVDIDTLDTALTRGPRHGHDNARATARIEFSAAGRAEPGQLPVRIGYALA
JGI12627J18819_101879792F000572AGAAGGVPDKITYYAIIGEDRTVDNPYGLARRLEHDDGPSDEALRKDFSWKATPVIAEWERGDFADELVEISHEQAERIVHYFRERWGSDG*
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