Scaffold GOS2258_10051

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2258_10051

Scaffold GOS2258_10051

Overview

Basic Information
Taxon OID	3300001928 Open in IMG/M
Scaffold ID	GOS2258_10051 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Tropical South Pacific Ocean - GS043
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1821
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Salacisavirus → Prochlorococcus virus PSSM2	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	South Pacific Ocean
Coordinates	Lat. (^o)	-7.661111	Long. (^o)	-116.11916	Alt. (m)		Depth (m)	1.9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005118	Metagenome	411	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2258_100515	F005118	AGG	MMNYMMMTMATQTSRAKRLVKLLERLLRKRELFDDEQYKLIKEQLKVAKNELALIEEKTSKGFK*

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