NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2267_100534

Scaffold GOS2267_100534


Overview

Basic Information
Taxon OID3300001934 Open in IMG/M
Scaffold IDGOS2267_100534 Open in IMG/M
Source Dataset NameEstuary microbial communities from Chesapeake Bay, Maryland, USA - MOVE858
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1733
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameChesapeake Bay, Maryland, USA
CoordinatesLat. (o)38.133335Long. (o)-76.38333Alt. (m)Depth (m)2.07
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056625Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
GOS2267_1005342F056625GAGGMMIVNLSPLEIDFLLRELQANQGMIAPSASIPAWYRHSIQETLRDALLADRKERWALSDKRHKELLDAEKEGLVREYTRQAEANQSRLQGAYAQTGIERRTDSESL*
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