Scaffold GOS2267_102148

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2267_102148

Scaffold GOS2267_102148

Overview

Basic Information
Taxon OID	3300001934 Open in IMG/M
Scaffold ID	GOS2267_102148 Open in IMG/M
Source Dataset Name	Estuary microbial communities from Chesapeake Bay, Maryland, USA - MOVE858
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1868
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Chesapeake Bay, Maryland, USA
Coordinates	Lat. (^o)	38.133335	Long. (^o)	-76.38333	Alt. (m)		Depth (m)	2.07
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038219	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2267_1021485	F038219	GGTGG	MNKNAQLQTADQTLKGAVLALGSYVAHSKNVDPQIIALSVPVAAGVMAWLSTLFGNENTACLFVEKDPPQK*

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