Scaffold GOS2219_1028057

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2219_1028057

Scaffold GOS2219_1028057

Overview

Basic Information
Taxon OID	3300001941 Open in IMG/M
Scaffold ID	GOS2219_1028057 Open in IMG/M
Source Dataset Name	Marine microbial communities from Browns Bank, Gulf of Maine - GS003
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	828
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Browns Bank, Gulf of Maine, Canada
Coordinates	Lat. (^o)	42.85278	Long. (^o)	-66.217224	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040338	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2219_10280573	F040338	AGGA	MATVQARHERNDPNAGMQGAYYTVDIAMGAFLDTETINGGRLSPCAANDFATKPTTLAQSLLVSRGQ

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