NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2262_1005758

Scaffold GOS2262_1005758


Overview

Basic Information
Taxon OID3300001942 Open in IMG/M
Scaffold IDGOS2262_1005758 Open in IMG/M
Source Dataset NameMarine microbial communities from Polynesia - GS047
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1461
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NamePolynesia
CoordinatesLat. (o)-10.131389Long. (o)-135.44945Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y

Sequences

Protein IDFamilyRBSSequence
GOS2262_10057582F000464N/AMLRTYSHHDHEIDDLEEEFWPMMGVLLIIWVIYTAIVHFLDWLTFDAIPWWAEPLTILPFLFLLIMKEMFDSLNPLHWWPLIWGYEAKLPEKDKITIRPLDTERIMAQHGGRLNVHIIDYEHIKFRRKKDAVIFGLRYF*
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