NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2262_1020197

Scaffold GOS2262_1020197


Overview

Basic Information
Taxon OID3300001942 Open in IMG/M
Scaffold IDGOS2262_1020197 Open in IMG/M
Source Dataset NameMarine microbial communities from Polynesia - GS047
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1946
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NamePolynesia
CoordinatesLat. (o)-10.131389Long. (o)-135.44945Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002334Metagenome569N
F099424Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
GOS2262_10201971F002334N/AFRQFHPDNPYVLICDGGKSFHRISKRYNCLYVHEEDNLGYRDHTHESGIYGMTKEEVLEWLRRFRLACTLCNTDHILMMEDDILIRGEIHVPEEWEFAGQAKPGNLLQEPFMIYLTEKYGVEWNVNYYGTGGGSIFNAKTFLENYERVIKIFDEEFDYIKEELCGNLGWVDVWMPMYYFLCGKQYRHNNLLTETTSNPIWTISKEPIVHQYKVHYE*
GOS2262_10201972F099424N/AMSKITFGYIVGGEDKHYNNLLRSLESLERIEQPYEVVILDADSRLETDEDKPNVRIIPFSCR*
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