Scaffold GOS2226_1004039

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2226_1004039

Scaffold GOS2226_1004039

Overview

Basic Information
Taxon OID	3300001943 Open in IMG/M
Scaffold ID	GOS2226_1004039 Open in IMG/M
Source Dataset Name	Marine microbial communities from Cape May, New Jersey, USA - GS010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1513
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Cape May, New Jersey, USA
Coordinates	Lat. (^o)	38.94	Long. (^o)	-74.685	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101910	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2226_10040391	F101910	N/A	MLFLLEKKEKKLLTDYQICEIDIEKSSTAKYLEQNYSCEWGFNQDTNLDPFFHLRACIVSPVKIASGKTIPIPTGIYPALKNPNFRIEVNSFTDLVYEQGLALADGISTFEFTFRNEIWLLIKNNSEQAQMIQPTQKIATFSVNYRPRMVLNYVEEIEDIAWKNSSAKSYIQKIKKKIRPEVHDVKKEKHRDLDYGRSVIQQYIDGGFATHQLDINEAEKTTR

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