NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2241_1000698

Scaffold GOS2241_1000698


Overview

Basic Information
Taxon OID3300001945 Open in IMG/M
Scaffold IDGOS2241_1000698 Open in IMG/M
Source Dataset NameMarine microbial communities from Galapagos, Equador - GS026
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2660
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameGalapagos, Equador
CoordinatesLat. (o)1.2641667Long. (o)-90.295Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014025Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
GOS2241_10006988F014025AGGGGGMKLDNYDLSTIHYALFYYMDNANLDEDEMEWIGLLREKVDSIMVSQINYENECG*
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