Scaffold GOS2241_1022954

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2241_1022954

Scaffold GOS2241_1022954

Overview

Basic Information
Taxon OID	3300001945 Open in IMG/M
Scaffold ID	GOS2241_1022954 Open in IMG/M
Source Dataset Name	Marine microbial communities from Galapagos, Equador - GS026
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1547
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Galapagos, Equador
Coordinates	Lat. (^o)	1.2641667	Long. (^o)	-90.295	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000639	Metagenome	968	Y
F047727	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2241_10229541	F047727	AGG	MINPFSIILSVSSLFIFLRILQKKVEPDELMRPSNPYKNVRDSDEEYGEKTDYK*
GOS2241_10229544	F000639	N/A	MIHTSYTVGITTGEYKALQYVTGDIDFWVSNVLKERARNAYEDIQQKYVTTKISKGEPITAIGSTAIIEAAYAEGIIGIATA*

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