NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2244_1020527

Scaffold GOS2244_1020527


Overview

Basic Information
Taxon OID3300001946 Open in IMG/M
Scaffold IDGOS2244_1020527 Open in IMG/M
Source Dataset NameMarine microbial communities from North James Bay, Santigo Island, Equador
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)611
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae → unclassified Rhodobiaceae → Rhodobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameNorth James Bay, Santigo Island, Equador
CoordinatesLat. (o)-0.2Long. (o)-90.83528Alt. (m)Depth (m)2.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021783Metagenome / Metatranscriptome217N

Sequences

Protein IDFamilyRBSSequence
GOS2244_10205271F021783N/ALTLKRAISLKFRSGGNNITIRGSTNTYGYAYCGPTFNTLNRFGLSHFTGSGGRAVVSATGGASDSTVTTSISPLRIDNLADFRLTGTYNTSLDGEIVQMGDIATDRLKTNLALPTEITEKDL*
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