NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2228_1005570

Scaffold GOS2228_1005570


Overview

Basic Information
Taxon OID3300001948 Open in IMG/M
Scaffold IDGOS2228_1005570 Open in IMG/M
Source Dataset NameMarine microbial communities from Chesapeake Bay, Maryland, USA - GS012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1403
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameChesapeake Bay, Maryland, USA
CoordinatesLat. (o)38.946945Long. (o)-76.41722Alt. (m)Depth (m)13.2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009461Metagenome / Metatranscriptome317Y

Sequences

Protein IDFamilyRBSSequence
GOS2228_10055703F009461N/AMGERMKINGLTILWFMIATGLLSYAVSLWHTEIYNQGYWRGRQVGWNMHRRMVNIEKEVDEVFDYEQNR*
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