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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300001948 Open in IMG/M |
| Scaffold ID | GOS2228_1046116 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Chesapeake Bay, Maryland, USA - GS012 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | J. Craig Venter Institute (JCVI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1648 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Chesapeake Bay, Maryland, USA | |||||||
| Coordinates | Lat. (o) | 38.946945 | Long. (o) | -76.41722 | Alt. (m) | Depth (m) | 13.2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038473 | Metagenome | 166 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| GOS2228_10461161 | F038473 | AGGAG | MDLGFSIEIEYPKEMIQTSPLPPGEHMVEIQYIGSKPTKSGGWMLNMKLANDHGFVWDNFNIGHASETTRQSAQKKLGRLARCSGLQGSFSNTDDLLNRTVAVELGLNQNGYIEVLKYKEKLSQVPVMDTDDDEPEF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |