NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2238_1046962

Scaffold GOS2238_1046962


Overview

Basic Information
Taxon OID3300001949 Open in IMG/M
Scaffold IDGOS2238_1046962 Open in IMG/M
Source Dataset NameMarine microbial communities from Panama City, Panama - GS022
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1555
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NamePanama City, Panama
CoordinatesLat. (o)6.492778Long. (o)-82.90389Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049703Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
GOS2238_10469625F049703N/AMISTLTDSKGTILSVSDKVRDEEGFTWWVLSMFPEINSVVGITTNEDRFNRKAFRPEELTICDS*
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