Scaffold GOS2227_1047916

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GOS2227_1047916

Scaffold GOS2227_1047916

Overview

Basic Information
Taxon OID	3300001950 Open in IMG/M
Scaffold ID	GOS2227_1047916 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Bay, New Jersey, USA - GS011
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1476
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Delaware Bay, New Jersey, USA
Coordinates	Lat. (^o)	39.417778	Long. (^o)	-75.504166	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F061851	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
GOS2227_10479162	F061851	GAG	MSVPIPTIAISSVPLPQFVPRSRREEVTRDTANARNLELQRSIAPIQQSFFRPEPSTSVFGPKLEVRHNDQKALASRNKPPTSVPAPSFDPAGPKLVGNVFFDQYAPEYDPRNVVRELRGSVKDDKALRGEEESKRILSRGFSSRYVPQGYAEQQQLNSLEAFEQLRPKIDDLSRQYRSYD*

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