NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2224_1013404

Scaffold GOS2224_1013404


Overview

Basic Information
Taxon OID3300001952 Open in IMG/M
Scaffold IDGOS2224_1013404 Open in IMG/M
Source Dataset NameMarine microbial communities from Newport Harbor, Rhode Island, USA - GS008
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1655
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameNewport Harbor, Rhode Island, USA
CoordinatesLat. (o)41.485832Long. (o)-71.35111Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008783Metagenome / Metatranscriptome328Y

Sequences

Protein IDFamilyRBSSequence
GOS2224_10134042F008783AGGAMATVQARHERNDANAGMQGAYYTVDIAQSDFLDTETINGGRLSPCAANDFATKPTTKAQSLLVSRGQLRYKLMLNNLQIRSNCRIINMVTTYASDAGDSPITDINFGIVFENDDFVPTTGTSADGSTALSSKITYIKDKIAEALYSSHTEKMSVFNPTSGTGQIADEEVSVGPVLLVSQDEIVDAITVAEVSGFRSNVDAETPTDNALTYSAE*
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