NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2231_1028261

Scaffold GOS2231_1028261


Overview

Basic Information
Taxon OID3300001953 Open in IMG/M
Scaffold IDGOS2231_1028261 Open in IMG/M
Source Dataset NameMarine microbial communities from Key West, Florida, USA - GS015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1534
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameKey West, Florida, USA
CoordinatesLat. (o)24.488333Long. (o)-83.07Alt. (m)Depth (m)1.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002215Metagenome / Metatranscriptome582Y
F007475Metagenome350Y
F044549Metagenome154Y

Sequences

Protein IDFamilyRBSSequence
GOS2231_10282611F007475N/AYAAMWSILHDEGNEPLKLAAKYNQNGVNITVDFEDHNLNKNDKIQLNFTSGNAISGEYTITDVPNPNSFTVVYPFTQTTGGYVTVENLKKHEYVGAWLLEPSDKPIGRGLENWEKRWAKEKRKMQEAVEVFALYNRSTKWEGNKNIIGDFNLPQDVANFDPSVIAMTLTDSLKRDETGGLNRSGKAFNTTNRMIAMVNKLFNKAPTVLDDVKFGIVNKPLSEFTNVFEAGLLQAGDYINGELLDASINTSNMDAGTYNPETAQDTVVDAGLYINV*
GOS2231_10282612F044549N/AMAVQIQSRRSSTAHDRPFPIRLGAGELAVNNNNVSPGLFFADILHLQVQV*
GOS2231_10282614F002215N/AMEPQVIAAIISGSIGAFAGITRALGSFNKKLDRRFENIEKNVEKLKYEVLHDYVLKEDFLREMQAVHSKLDRILDHLLNK*
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