NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2266_1023551

Scaffold GOS2266_1023551


Overview

Basic Information
Taxon OID3300001956 Open in IMG/M
Scaffold IDGOS2266_1023551 Open in IMG/M
Source Dataset NameMarine microbial communities from Rangirora Atoll, Polynesia Archipelagos - GS051
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2017
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameRangirora Atoll, Polynesia Archipelagos
CoordinatesLat. (o)-15.143611Long. (o)-147.435Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008851Metagenome / Metatranscriptome327Y
F015681Metagenome / Metatranscriptome253Y
F026125Metagenome / Metatranscriptome199N
F075321Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
GOS2266_10235512F015681GGAGGMAHHKTEYENYILVSSHTKTLGGTYQRFVKFKGLMSSLNLMSQKQSNSYTYNGETYVSKLTASEINKIQSALDYGTYNSSIEKLKYIFNDIGDRLF*
GOS2266_10235515F026125AGGAGMFNYINSWKSRKSEKWNIEVRLGRITLLQLNYDAKKAKFRFMILNFGLEIGG*
GOS2266_10235517F008851AGGTGGMKKYKVIENYSSTEGTLYSGEVLKEDQNNTLDGHKRLKDSMGRVWFVPHKYIVRI*
GOS2266_10235518F075321AGGAGMTKVIYNSKFPAIDRDEFLTPFDRMFDTIVSAQFQ
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