NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2230_1021260

Scaffold GOS2230_1021260


Overview

Basic Information
Taxon OID3300001960 Open in IMG/M
Scaffold IDGOS2230_1021260 Open in IMG/M
Source Dataset NameMarine microbial communities from South of Charleston, South Carolina, USA - GS014
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1611
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameCharleston, South Carolina, USA
CoordinatesLat. (o)32.506943Long. (o)-79.263885Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009492Metagenome / Metatranscriptome317Y

Sequences

Protein IDFamilyRBSSequence
GOS2230_10212602F009492N/ALLGLVGIVRADEAVVTETTQPVVSVTGEFSTDITFGDATTFASPYSGLTLSGDGWVLSTNLSDGMVNIEEAKYSWNVVDDVLTLTFGSQAEPYGLAWGLHRPATNWFVSTPRDHMVTNGVGVGLNKWGVGADLFWGGDSVDEEGTSELYWAGRFSYGLNLLGIDSNFGLSLNSNEAQLIDVSAGNNVFEASFEYDLSEEADGAYWLRGVVTPTQVQGAFLLIGLNSDDVVTYGVGYKCSDNMKVVSEFNSGLKDAEGNDVENDFSIRASYSF*
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