NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold GOS2230_1037948

Scaffold GOS2230_1037948


Overview

Basic Information
Taxon OID3300001960 Open in IMG/M
Scaffold IDGOS2230_1037948 Open in IMG/M
Source Dataset NameMarine microbial communities from South of Charleston, South Carolina, USA - GS014
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1665
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameCharleston, South Carolina, USA
CoordinatesLat. (o)32.506943Long. (o)-79.263885Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032309Metagenome / Metatranscriptome180N
F033761Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
GOS2230_10379481F033761GGAGMAQINNHEFYGLDTAYVEKHKELFDFLDSQNLDVEINDDFAELKTILMSKDKDDYAYDFDPAFESYLDSATGFVLYLRYNNEVVATYAAKKLSMPNFIEQMKLKYPGNYDTIDEFPGQEAYSSCQWVSKDHRGKKWGRVLDHLKKHICFDLMKCDTNYAIHKSDLRDYHVNHLAYSNNQRLAIIPNGDVGGAGEVIDKEYWIAYSSNTEWADKQSEIKALY
GOS2230_10379482F032309AGGAMRTETKEFFDYTKSLPFKDITHFWDIPYKEMLDEVKSVDEKYWRRPFDADNDQIDRMKLDDSESVNHYPGLKGDLVEAHGWKSLCFLNETGDSKDQITRFPPVFNTAGDYKETLKYFLDNRKWTNVAEFSPTLVKFFKEVISKYMHVGQIFVTRLEGGGVITEHNDIPEDSKHLLNGEQVHMFDMLNTFNLCLNHVKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRKPQYQIIWQGIYKKQFRQLVMENK*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.