NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GOS2240_1019383

Scaffold GOS2240_1019383


Overview

Basic Information
Taxon OID3300001961 Open in IMG/M
Scaffold IDGOS2240_1019383 Open in IMG/M
Source Dataset NameMarine microbial communities from Dirty Rock, Cocos Island, Costa Rica - GS025
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1769
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location NameDirty Rock, Cocos Island, Costa Rica
CoordinatesLat. (o)5.552778Long. (o)-87.087776Alt. (m)Depth (m)1.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005670Metagenome / Metatranscriptome393Y
F049690Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
GOS2240_10193833F005670N/AMPLLSRQEYNLILRSFDKYDVYMNTKEKELREQLEEKLYNNFYNPKDKVAQTDINLPALYDIKTEKDTSEDNVIRSLNFTS*
GOS2240_10193834F049690N/AMPNLSTNLELLNVINEDVKSLKEWTNMPPISEELYNELVKEFNNERKYFFNDSYTLEG*

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